• Getting Started
    Overview Installation Input Data Quick Start Output Data
  • Pangenome Alignment
    Overview Build Alignments Extra parameters
  • Feature-calling
    Overview Alignment Summary SNPs and Diversity SVs and Mobilome Families
  • Simsearch
  • Chromotools
  • R library: Sequences
    Handy Functions Dotplots ORF-Finder Sequence Alignment Plots
    R library: Pangenome
    Pangenome Plots Coordinate Conversion & Liftover Extracting Specific Regions
  • Workshop